Plasma Proteome Database

1.

Ray, S., Reddy, P. J., Jain, R., Gollapalli, K., Moiyadi, A. and Srivastava, S. Proteomic technologies for the identification of disease biomarkers in serum: advances and challenges ahead. Proteomics. 2011. 11, 2139-2161. [PubMed]

2.

Farrah, T., Deutsch, E. W. and Aebersold, R. Using the Human Plasma PeptideAtlas to study human plasma proteins. Methods in Molecular Biology. 2011. 728, 349-374. [PubMed]

3.

Ossola, R., Schiess, R., Picotti, P., Rinner, O., Reiter, L. and Aebersold, R. Biomarker validation in blood specimens by selected reaction monitoring mass spectrometry of N-glycosites. Methods in Molecular Biology. 2011. 728, 179-194. [PubMed]

4.

Surinova, S., Schiess, R., Huttenhain, R., Cerciello, F., Wollscheid, B. and Aebersold, R. On the development of plasma protein biomarkers. Journal of Proteome Research. 2011. 10, 5-16. [PubMed]

5.

Vivanco, F., Mas, S., Darde, V. M., De, l. a., Alvarez-Llamas, G. and Barderas, M. G. Vascular proteomics. Proteomics. Clinical Applications. 2007. 1, 1102-1122. [PubMed]

6.

Omenn G. S. THE HUPO Human Plasma Proteome Project. Proteomics. Clinical Applications. 2007. 1, 769-779. [PubMed]

7.

Drake, R. R., Cazares, L. and Semmes, O. J. Mining the low molecular weight proteome of blood. Proteomics. Clinical Applications. 2007. 1, 758-768. [PubMed]

8.

Meng, Z. and Veenstra, T. D. Proteomic analysis of serum, plasma, and lymph for the identification of biomarkers. Proteomics. Clinical Applications. 2007. 1, 747-757. [PubMed]

9.

Chiu, C. L., Randall, S. and Molloy, M. P. Recent progress in selected reaction monitoring MS-driven plasma protein biomarker analysis. Bioanalysis. 2009. 1, 847-855. [PubMed]

10.

Zhang, Q., Faca, V. and Hanash, S. Mining the plasma proteome for disease applications across seven logs of protein abundance. Journal of Proteome Research. 2011. 10, 46-50. [PubMed]

11.

Teng, P. N., Bateman, N. W., Hood, B. L. and Conrads, T. P. Advances in proximal fluid proteomics for disease biomarker discovery. Journal of Proteome Research. 2010. 9, 6091-6100. [PubMed]

12.

Anderson N. L. Counting the proteins in plasma. Clinical Chemistry. 2010. 56, 1775-1776. [PubMed]

13.

Gaso-Sokac, D. and Josic, D. The role of proteomics in plasma fractionation and quality control of plasma-derived therapeutic proteins. Blood Transfusion = Trasfusione Del Sangue. 2010. 8 Suppl 3, s86-91. [PubMed]

14.

Leth-Larsen, R., Lund, R. R. and Ditzel, H. J. Plasma membrane proteomics and its application in clinical cancer biomarker discovery. Molecular & Cellular Proteomics : MCP. 2010. 9, 1369-1382. [PubMed]

15.

Anderson N. L. The clinical plasma proteome: a survey of clinical assays for proteins in plasma and serum. Clinical Chemistry. 2010. 56, 177-185. [PubMed]

16.

Anderson N. L. The clinical plasma proteome: a survey of clinical assays for proteins in plasma and serum. Clinical Chemistry. 2010. 56, 177-185. [PubMed]

17.

Davidsson, P., Hulthe, J., Fagerberg, B. and Camejo, G. Proteomics of apolipoproteins and associated proteins from plasma high-density lipoproteins. Arteriosclerosis, Thrombosis, and Vascular Biology. 2010. 30, 156-163. [PubMed]

18.

Sahab, Z. J., Semaan, S. M. and Sang, Q. X. Methodology and applications of disease biomarker identification in human serum. Biomarker Insights. 2007. 2, 21-43. [PubMed]

19.

Liumbruno, G., D'Alessandro, A., Grazzini, G. and Zolla, L. Blood-related proteomics. Journal of Proteomics. 2010. 73, 483-507. [PubMed]

20.

Apweiler, R., Aslanidis, C., Deufel, T., Gerstner, A., Hansen, J., Hochstrasser, D., Kellner, R., Kubicek, M., Lottspeich, F., Maser, E., Mewes, H. W., Meyer, H. E., Mullner, S., Mutter, W., Neumaier, M., Nollau, P., Nothwang, H. G., Ponten, F., Radbruch, A., Reinert, K., Rothe, G., Stockinger, H., Tarnok, A., Taussig, M. J., Thiel, A., Thiery, J., Ueffing, M., Valet, G., Vandekerckhove, J., Verhuven, W., Wagener, C., Wagner, O. and Schmitz, G. Approaching clinical proteomics: current state and future fields of application in fluid proteomics. Clinical Chemistry and Laboratory Medicine : CCLM / FESCC. 2009. 47, 724-744. [PubMed]

21.

Manley, S. A. and Gailer, J. Analysis of the plasma metalloproteome by SEC-ICP-AES: bridging proteomics and metabolomics. Expert Review of Proteomics. 2009. 6, 251-265. [PubMed]

22.

Schiess, R., Wollscheid, B. and Aebersold, R. Targeted proteomic strategy for clinical biomarker discovery. Molecular Oncology. 2009. 3, 33-44. [PubMed]

23.

Pernemalm, M., Lewensohn, R. and Lehtio, J. Affinity prefractionation for MS-based plasma proteomics. Proteomics. 2009. 9, 1420-1427. [PubMed]

24.

Paczesny, S., Levine, J. E., Braun, T. M. and Ferrara, J. L. Plasma biomarkers in graft-versus-host disease: a new era? Biology of Blood and Marrow Transplantation : Journal of the American Society For Blood and Marrow Transplantation. 2009. 15, 33-38. [PubMed]

25.

Garbett, N. C., Mekmaysy, C. S., Helm, C. W., Jenson, A. B. and Chaires, J. B. Differential scanning calorimetry of blood plasma for clinical diagnosis and monitoring. Experimental and Molecular Pathology. 2009. 86, 186-191. [PubMed]

26.

Anderson, N. L., Anderson, N. G., Pearson, T. W., Borchers, C. H., Paulovich, A. G., Patterson, S. D., Gillette, M., Aebersold, R. and Carr, S. A. A human proteome detection and quantitation project. Molecular & Cellular Proteomics : MCP. 2009. 8, 883-886. [PubMed]

27.

de R. Proteomic analysis of human plasma and blood cells in nutritional studies: development of biomarkers to aid disease prevention. Expert Review of Proteomics. 2008. 5, 819-826. [PubMed]

28.

Zolla L. Proteomics studies reveal important information on small molecule therapeutics: a case study on plasma proteins. Drug Discovery Today. 2008. 13, 1042-1051. [PubMed]

29.

Nissum, M. and Foucher, A. L. Analysis of human plasma proteins: a focus on sample collection and separation using free-flow electrophoresis. Expert Review of Proteomics. 2008. 5, 571-587. [PubMed]

30.

Hortin, G. L., Sviridov, D. and Anderson, N. L. High-abundance polypeptides of the human plasma proteome comprising the top 4 logs of polypeptide abundance. Clinical Chemistry. 2008. 54, 1608-1616. [PubMed]

31.

Pisonero, J. and Gunther, D. Femtosecond laser ablation inductively coupled plasma mass spectrometry: fundamentals and capabilities for depth profiling analysis. Mass Spectrometry Reviews. 2008. 27, 609-623. [PubMed]

32.

Liumbruno, G., D'Amici, G. M., Grazzini, G. and Zolla, L. Transfusion medicine in the era of proteomics. Journal of Proteomics. 2008. 71, 34-45. [PubMed]

33.

Gerszten, R. E., Accurso, F., Bernard, G. R., Caprioli, R. M., Klee, E. W., Klee, G. G., Kullo, I., Laguna, T. A., Roth, F. P., Sabatine, M., Srinivas, P., Wang, T. J. and Ware, L. B. Challenges in translating plasma proteomics from bench to bedside: update from the NHLBI Clinical Proteomics Programs. American Journal of Physiology. Lung Cellular and Molecular Physiology. 2008. 295, L16-22. [PubMed]

34.

Hanash, S. M., Pitteri, S. J. and Faca, V. M. Mining the plasma proteome for cancer biomarkers. Nature. 2008. 452, 571-579. [PubMed]

35.

Wildgruber, R., Yi, J., Nissum, M., Eckerskorn, C. and Weber, G. Free-flow electrophoresis system for plasma proteomic applications. Methods in Molecular Biology. 2008. 424, 287-300. [PubMed]

36.

Dayarathna, M. K., Hancock, W. S. and Hincapie, M. A two step fractionation approach for plasma proteomics using immunodepletion of abundant proteins and multi-lectin affinity chromatography: Application to the analysis of obesity, diabetes, and hypertension diseases. Journal of Separation Science. 2008. 31, 1156-1166. [PubMed]

37.

Merrick B. A. The plasma proteome, adductome and idiosyncratic toxicity in toxicoproteomics research. Briefings in Functional Genomics & Proteomics. 2008. 7, 35-49. [PubMed]

38.

Issaq, H. J., Xiao, Z. and Veenstra, T. D. Serum and plasma proteomics. Chemical Reviews. 2007. 107, 3601-3620. [PubMed]

39.

Barelli, S., Crettaz, D., Thadikkaran, L., Rubin, O. and Tissot, J. D. Plasma/serum proteomics: pre-analytical issues. Expert Review of Proteomics. 2007. 4, 363-370. [PubMed]

40.

Thiele, T., Steil, L., Volker, U. and Greinacher, A. Proteomics of blood-based therapeutics: a promising tool for quality assurance in transfusion medicine. BioDrugs : Clinical Immunotherapeutics, Biopharmaceuticals and Gene Therapy. 2007. 21, 179-193. [PubMed]

41.

Herosimczyk, A., Dejeans, N., Sayd, T., Ozgo, M., Skrzypczak, W. F. and Mazur, A. Plasma proteome analysis: 2D gels and chips. Journal of Physiology and Pharmacology : An Official Journal of the Polish Physiological Society. 2006. 57 Suppl 7, 81-93. [PubMed]

42.

Kim, M. R. and Kim, C. W. Human blood plasma preparation for two-dimensional gel electrophoresis. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 2007. 849, 203-210. [PubMed]

43.

Luque-Garcia, J. L. and Neubert, T. A. Sample preparation for serum/plasma profiling and biomarker identification by mass spectrometry. Journal of Chromatography. A. 2007. 1153, 259-276. [PubMed]

44.

Hoffman, S. A., Joo, W. A., Echan, L. A. and Speicher, D. W. Higher dimensional (Hi-D) separation strategies dramatically improve the potential for cancer biomarker detection in serum and plasma. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 2007. 849, 43-52. [PubMed]

45.

Schmidt, A. and Aebersold, R. High-accuracy proteome maps of human body fluids. Genome Biology. 2006. 7, 242. [PubMed]

46.

Schmidt, A. and Aebersold, R. High-accuracy proteome maps of human body fluids. Genome Biology. 2006. 7, 242. [PubMed]

47.

Hu, S., Loo, J. A. and Wong, D. T. Human body fluid proteome analysis. Proteomics. 2006. 6, 6326-6353. [PubMed]

48.

Queloz, P. A., Thadikkaran, L., Crettaz, D., Rossier, J. S., Barelli, S. and Tissot, J. D. Proteomics and transfusion medicine: future perspectives. Proteomics. 2006. 6, 5605-5614. [PubMed]

49.

Rai, A. J. and Vitzthum, F. Effects of preanalytical variables on peptide and protein measurements in human serum and plasma: implications for clinical proteomics. Expert Review of Proteomics. 2006. 3, 409-426. [PubMed]

50.

Lee, H. J., Lee, E. Y., Kwon, M. S. and Paik, Y. K. Biomarker discovery from the plasma proteome using multidimensional fractionation proteomics. Current Opinion in Chemical Biology. 2006. 10, 42-49. [PubMed]

51.

Jacobs, J. M., Adkins, J. N., Qian, W. J., Liu, T., Shen, Y., Camp, D. G. and Smith, R. D. Utilizing human blood plasma for proteomic biomarker discovery. Journal of Proteome Research. 2005. 4, 1073-1085. [PubMed]

52.

Jacobs, J. M., Adkins, J. N., Qian, W. J., Liu, T., Shen, Y., Camp, D. G. and Smith, R. D. Utilizing human blood plasma for proteomic biomarker discovery. Journal of Proteome Research. 2005. 4, 1073-1085. [PubMed]

53.

Thadikkaran, L., Siegenthaler, M. A., Crettaz, D., Queloz, P. A., Schneider, P. and Tissot, J. D. Recent advances in blood-related proteomics. Proteomics. 2005. 5, 3019-3034. [PubMed]

54.

Lathrop, J. T., Hayes, T. K., Carrick, K. and Hammond, D. J. Rarity gives a charm: evaluation of trace proteins in plasma and serum. Expert Review of Proteomics. 2005. 2, 393-406. [PubMed]

55.

Plebani M. Proteomics: the next revolution in laboratory medicine? Clinica Chimica Acta; International Journal of Clinical Chemistry. 2005. 357, 113-122. [PubMed]

56.

Veenstra, T. D., Conrads, T. P., Hood, B. L., Avellino, A. M., Ellenbogen, R. G. and Morrison, R. S. Biomarkers: mining the biofluid proteome. Molecular & Cellular Proteomics : MCP. 2005. 4, 409-418. [PubMed]

57.

Taback, B. and Hoon, D. S. Circulating nucleic acids and proteomics of plasma/serum: clinical utility. Annals of the New York Academy of Sciences. 2004. 1022, 1-8. [PubMed]

58.

Lathrop, J. T., Anderson, N. L., Anderson, N. G. and Hammond, D. J. Therapeutic potential of the plasma proteome. Current Opinion in Molecular Therapeutics. 2003. 5, 250-257. [PubMed]

59.

Anderson, N. L. and Anderson, N. G. The human plasma proteome: history, character, and diagnostic prospects. Molecular & Cellular Proteomics : MCP. 2002. 1, 845-867. [PubMed]

60.

Bergquist, J., Palmblad, M., Wetterhall, M., Hakansson, P. and Markides, K. E. Peptide mapping of proteins in human body fluids using electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Mass Spectrometry Reviews. 2002. 21, 2-15. [PubMed]